miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|124627395|gb|EH724122.1|EH724122 GCGGGGGATCAACAAAATTTCAATTTCATCTCGCATCTTATCTTCCCCAAAAAAAAACCCTAATCCCGGGAAAACAACCC
AAATCGAATCCAATTTTCCCGCCACTGAACCCAATTTCACAAATTCGATCTACGTATCTTCTGGATCTTCACCGGTAACA
ACTGTAGATCCGTCGAATTGGAAAAGATGTCCGGCCAATCCGACCCTCGAGGTTCTACATTTTCAGCCGCCGAGTTGGAG
TTTTTAGCGGAGGATGAAACCATGGAGATTGTTCCCAACCTAAGCATGGACCGCCTAAGTTTGATTTCAGGTGATTTTGG
TCCGTTTCGGCCGCAAATAGCTACTCAAGTTCCTATATGGTTAGCCGTTGCTTTGAAGAAGAGAGGGAAGTGCACCATTC
GCCCTCCGGATTGGATGTCCGTTGAAAAGTTGACTCAGGTTCTGGAGGCAGAGCGTGACTCTGCTAGTTCTTTTGAAGCA
CTGCCATTTCACTATGTTGAGATTTCAAGGCTTCTTTTCGACCATGCTCGTGATGACATTCCCGATGTATACATGGTAAG
ATCTCTTATTGAAGACATCAAAGATGTAAGGTTTCACAAAATCGGCACTGGGTTAGAGAAGCTTTCATCCCGGACATATG
CAATGAAGCTAAACTTATCAGCAATGGAAGTGAATGTAATACGGCCATTTGTTACGGGAGGGCTGGAAACATTTTACAAA
CTTGGGAATCCGGAAATGATCCAAGAATCAGAGAGACAAGAATTCAGGCG




Most similar to sp|Q9C7A8|PSF2_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9C7A8|PSF2_ARATH DNA replication complex GINS protein PSF2
           OS=Arabidopsis thaliana GN=GINS2 PE=2 SV=2
          Length = 210

 Score =  251 bits (640), Expect = 5e-66
 Identities = 120/183 (65%), Positives = 147/183 (80%)
 Frame = +1

Query: 187 MSGQSDPRGSTFSAAELEFLAEDETMEIVPNLSMDRLSLISGDFGPFRPQIATQVPIWLA 366
           M+GQ+DP  S FS  E+EF+AEDE +EIVPN++M++L+ ISGDFG F PQI T+VP+WLA
Sbjct: 1   MAGQTDPHISLFSPQEVEFMAEDELVEIVPNMNMEQLNFISGDFGRFIPQIPTKVPLWLA 60

Query: 367 VALKKRGKCTIRPPDWMSVEKLTQVLEAERDSASSFEALPFHYVEISRLLFDHARDDIPD 546
           VALK+RGKCT RPP WMSV+ LTQ+LEAER+S S+F+ALPF YVEI+RLLFDHARDDIPD
Sbjct: 61  VALKRRGKCTFRPPGWMSVDNLTQILEAERESQSTFQALPFSYVEIARLLFDHARDDIPD 120

Query: 547 VYMVRSLIEDIKDVRFHKIGTGLEKLSSRTYAMKLNLSAMEVNVIRPFVTGGLETFYKLG 726
           +YMVRSL+EDI+DVR HK+ T L      +     N+SAMEVN++RPFV   LE FYK  
Sbjct: 121 MYMVRSLVEDIRDVRLHKLETNLGSFQGTSAVKISNVSAMEVNIVRPFVIRALEAFYKHD 180

Query: 727 NPE 735
            PE
Sbjct: 181 KPE 183